SeQCos can't identify the alphabet

Dear all I was trying to run SeQCos usign the attached Ilumina dataset, but doesn´t work, the application show me the next error: Bio.QualitativeSequenceParseOne(System.IO.StreamReader): Could no...

Id #16417 | Release: None | Updated: Dec 15, 2014 at 4:51 PM by kch | Created: Sep 13, 2013 at 9:42 PM by leonardoBio

Trim By Quality Score tool: enable support of all FASTQ formats

Currently, this tool only supports trimming of Sanger/Illumina 1.8 encodings.

Id #15575 | Release: None | Updated: Jun 11, 2013 at 2:02 AM by kch | Created: Sep 3, 2012 at 8:18 PM by kch

Multiple scan of the file?

Hi there,   I noticed that this program is scanning the file multiple times for each of the graph, is there any reason for this or why not only scan the file once? (With large files the waiting is ...

Id #15571 | Release: None | Updated: Feb 12, 2013 at 8:54 PM by kch | Created: Sep 1, 2012 at 6:48 PM by kch

FASTQ formats broken in .NET Bio 1.01

Version 1.01 no longer auto-detects FASTQ format (see http://bio.codeplex.com/releases/view/81464), which may break SeQCoS functionality. Changes were made in QualitativeSequence.cs that need to be...

Id #15570 | Release: None | Updated: Jun 11, 2013 at 2:02 AM by kch | Created: Sep 1, 2012 at 6:46 PM by kch

Can't change output directory in UI

When running QC analysis via the UI, a user-specified output directory isn't supported. Currently, this is only available when running in command-line mode.

Id #14502 | Release: None | Updated: Feb 12, 2013 at 8:54 PM by kch | Created: Nov 30, 2011 at 1:27 AM by kch

Fix color scheme of base content by position graph

Turquoise color doesn't look very pleasant

Id #14454 | Release: None | Updated: Feb 12, 2013 at 8:54 PM by kch | Created: Nov 23, 2011 at 2:05 AM by kch

SeqcosUtil.exe /help not displaying Fastq format types

Output when calling "SeqcosUtil.exe /help" in command line:   ... /FastQFormat (/q) Required for FASTQ input files. Choose from [Bio.FastQFormatType[]] ...   Instead of Bio.FastQFormatType[], it ...

Id #14409 | Release: None | Updated: Jun 11, 2013 at 2:02 AM by kch | Created: Nov 7, 2011 at 3:23 AM by kch

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