SeQCoS Version 1.0.0

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Downloads: 20
Change Set: 85428
Released: Nov 8, 2011
Updated: Nov 10, 2011 by kch
Dev status: Stable Help Icon

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Application SeqcosInstaller.msi
application, 1037K, uploaded Nov 9, 2011 - 20 downloads

Release Notes

Version 1.0 is the first release of SeQCoS on Codeplex. Please report any bugs using the Issue Tracker.

Features
Although 1.0 offers only a basic set of features, they should be suitable for QC analysis:
  • Can parse/output FASTQ and FASTA formats using .NET Bio
  • Generates basic plots summarizing content and quality of read sequences and quality scores
  • Sequence manipulation tools: trimming and discarding reads based on read length, quality score, or regular expression
  • Invoke BLAST to perform sequence alignment against a reference database. A pre-formatted copy of NCBI UniVec is available here

Installation
  1. Please ensure that the prerequisite software has been installed, namely .NET Framework 4.0, Sho and blast+ toolkit.
  2. Open the MSI file to begin installation of SeQCoS

.NET Bio
A copy of Bio.dll from .NET Bio (Version 1.0, Oct 12 2011) is distributed with this installation. .NET Bio is available under the Apache License, Version 2.0.

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